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[FIX] Fixed a small bug in freesurfer label2annot fill_thresh specs #2377

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Merged
merged 11 commits into from
Feb 24, 2018
Merged

[FIX] Fixed a small bug in freesurfer label2annot fill_thresh specs #2377

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9f8f126
Fixed a small bug in label2annot fill_thresh specs (should be %f inst…
achetverikov Jan 18, 2018
1deffa1
Merge branch 'master' into freesurfer_model_label2vol_fix
achetverikov Jan 18, 2018
39e9804
Merge branch 'master' into freesurfer_model_label2vol_fix
achetverikov Jan 19, 2018
4dd0de5
Merge remote-tracking branch 'upstream/master' into freesurfer_model_…
achetverikov Feb 23, 2018
7723d30
TEST: make specs
achetverikov Feb 23, 2018
dfb3311
TEST: make specs
achetverikov Feb 23, 2018
5c7a446
STY: Whitespace [skip ci]
effigies Feb 23, 2018
cf5821b
TEST: make specs
achetverikov Feb 24, 2018
a6205c5
Merge remote-tracking branch 'upstream/master' into freesurfer_model_…
achetverikov Feb 24, 2018
03756c3
fix for Label2Annot example command line & change %.f to %g in fillth…
achetverikov Feb 24, 2018
bbe7f69
Merge branch 'freesurfer_model_label2vol_fix' of https://github.com/a…
achetverikov Feb 24, 2018
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4 changes: 2 additions & 2 deletions nipype/interfaces/freesurfer/model.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1144,7 +1144,7 @@ class Label2VolInputSpec(FSTraitedSpec):
invert_mtx = traits.Bool(
argstr='--invertmtx', desc='Invert the registration matrix')
fill_thresh = traits.Range(
0., 1., argstr='--fillthresh %.f', desc='thresh : between 0 and 1')
0., 1., argstr='--fillthresh %g', desc='thresh : between 0 and 1')
label_voxel_volume = traits.Float(
argstr='--labvoxvol %f', desc='volume of each label point (def 1mm3)')
proj = traits.Tuple(
Expand Down Expand Up @@ -1183,7 +1183,7 @@ class Label2Vol(FSCommand):

>>> binvol = Label2Vol(label_file='cortex.label', template_file='structural.nii', reg_file='register.dat', fill_thresh=0.5, vol_label_file='foo_out.nii')
>>> binvol.cmdline
'mri_label2vol --fillthresh 0 --label cortex.label --reg register.dat --temp structural.nii --o foo_out.nii'
'mri_label2vol --fillthresh 0.5 --label cortex.label --reg register.dat --temp structural.nii --o foo_out.nii'

"""

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2 changes: 1 addition & 1 deletion nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py
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Expand Up @@ -22,7 +22,7 @@ def test_Label2Vol_inputs():
nohash=True,
usedefault=True,
),
fill_thresh=dict(argstr='--fillthresh %.f', ),
fill_thresh=dict(argstr='--fillthresh %g', ),
hemi=dict(argstr='--hemi %s', ),
identity=dict(
argstr='--identity',
Expand Down