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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1k 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 82 37

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 66 29

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 59 17

  5. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 46 15

  6. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 46 12

Repositories

Showing 10 of 135 repositories
  • sequencing-data-analysis-training Public

    SIB course that introduces analysis of NGS data

    sib-swiss/sequencing-data-analysis-training’s past year of commit activity
    Shell 16 CC-BY-4.0 14 4 0 Updated Apr 24, 2025
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 33 MIT 4 2 0 Updated Apr 22, 2025
  • ds-package-creator Public

    Split a R package into a "client" and "server" version , datashield ready.

    sib-swiss/ds-package-creator’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Apr 22, 2025
  • sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 3 CC-BY-4.0 0 0 0 Updated Apr 20, 2025
  • sib-swiss/spatial-transcriptomics-training’s past year of commit activity
    R 2 CC-BY-4.0 1 1 0 Updated Apr 20, 2025
  • glittr-stats Public

    General statistics of Glittr.org. Comes with the manuscript.

    sib-swiss/glittr-stats’s past year of commit activity
    PostScript 2 0 0 0 Updated Apr 20, 2025
  • sib-swiss/cancer-variants-training’s past year of commit activity
    Lua 5 CC-BY-4.0 2 0 0 Updated Apr 20, 2025
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 14 MIT 2 13 (1 issue needs help) 0 Updated Apr 18, 2025
  • EPD Public

    The Eukaryotic Promoter Database (EPD) website

    sib-swiss/EPD’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • snp_detect Public archive

    Scans a multiple alignment composed of genomic, mRNA, and EST sequences that are believed to originate from the same gene for the presence of sequence variations

    sib-swiss/snp_detect’s past year of commit activity
    Fortran 0 GPL-3.0 0 0 0 Updated Apr 16, 2025

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