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    203 repositories

    • pynwb

      Public
      A Python API for working with Neurodata stored in the NWB Format
      Python
      •
      Other
      •86•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • roiextractors

      Public
      Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•13•33•17•Updated Apr 25, 2025Apr 25, 2025

    • jadhav-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•1•1•Updated Apr 25, 2025Apr 25, 2025

    • neuroconv

      Public
      Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•56•92•23•Updated Apr 25, 2025Apr 25, 2025

    • schneider-lab-to-nwb

      Public
      Python
      •
      MIT License
      •1•0•1•2•Updated Apr 25, 2025Apr 25, 2025

    • hnasko-lab-to-nwb

      Public
      NWB Conversion project for the Hnasko Lab
      Python
      •
      MIT License
      •0•0•2•1•Updated Apr 25, 2025Apr 25, 2025

    • kind-lab-to-nwb

      Public
      NWB Conversion project for the Kind lab.
      Python
      •
      MIT License
      •0•1•2•4•Updated Apr 24, 2025Apr 24, 2025

    • nelson-lab-to-nwb

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Apr 23, 2025Apr 23, 2025

    • spikeinterface

      Public
      A Python-based module for creating flexible and robust spike sorting pipelines.
      Python
      •
      MIT License
      •210•2•0•0•Updated Apr 22, 2025Apr 22, 2025

    • dandi_s3_log_parser

      Public
      S3 log parsing for the DANDI Archive.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•6•1•Updated Apr 22, 2025Apr 22, 2025

    • ndx-sound

      Public
      NWB extension of sounds
      ndx
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Apr 22, 2025Apr 22, 2025

    • cohen-u01-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 21, 2025Apr 21, 2025

    • cookiecutter-my-lab-to-nwb-template

      Public
      The standard cookiecutter template for all lab-specific NWB conversions.
      Python
      •
      MIT License
      •1•2•3•1•Updated Apr 21, 2025Apr 21, 2025

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      nwb-conversion
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•9•3•Updated Apr 21, 2025Apr 21, 2025

    • agents

      Public
      Open Neuroscience Agents
      Python
      •1•2•1•0•Updated Apr 20, 2025Apr 20, 2025

    • hdmf-zarr

      Public
      Zarr I/O backend for HDMF
      Python
      •
      Other
      •6•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • dandi-hugo-example

      Public
      example of website using hugo
      HTML
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 14, 2025Apr 14, 2025

    • neuroconv-spyglass

      Public
      Central Repository for spyglass-compatible interfaces and custom nwb-to-spyglass insertion code
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • dandi-docusaurus-example

      Public
      example of website using docusaurus
      TypeScript
      •
      MIT License
      •0•0•0•3•Updated Apr 8, 2025Apr 8, 2025

    • ndx-binned-spikes

      Public
      NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
      Python
      •
      MIT License
      •0•0•2•1•Updated Apr 2, 2025Apr 2, 2025

    • catalystneuro-dendro-apps

      Public
      CatalystNeuro Dendro Apps
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • photon-flux-estimation

      Public
      A Python library for estimating photon flux from multiphoton imaging data. This package provides tools to compute photon sensitivity and generate photon flux visualizations from imaging data.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • ndx-vame

      Public
      NWB extension for VAME.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 29, 2025Mar 29, 2025

    • staged-extensions

      Public
      A place to submit NWB Extensions for registration in the official NDX Catalog
      Other
      •20•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • ndx-microscopy

      Public
      An enhancement to core NWB schema types related to microscopy data.
      Python
      •
      MIT License
      •0•0•7•0•Updated Mar 28, 2025Mar 28, 2025

    • dan-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Mar 27, 2025Mar 27, 2025

    • python-neo

      Public
      Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •254•1•0•0•Updated Mar 26, 2025Mar 26, 2025

    • surmeier-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • khaliq-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • mcp

      Public
      CatalystNeuro MCP servers
      Python
      •
      MIT License
      •0•1•2•1•Updated Mar 20, 2025Mar 20, 2025