REL: 1.8.4

.mailmap

@@ -6,8 +6,8 @@ Alejandro Tabas <alextabas@gmail.com> <qtabas@gmail.com>
 Alejandro de la Vega <aleph4@gmail.com>
 Alejandro de la Vega <aleph4@gmail.com> <delavega@utexas.edu>
 Alexander Schaefer <alexschaefer83@gmail.com>
-Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@melisse.cbs.mpg.de>
 Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@aschaefer-U36SD.(none)>
+Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@melisse.cbs.mpg.de>
 Alexandre M. Savio <alexsavio@gmail.com>
 Alexandre M. Savio <alexsavio@gmail.com> <alexsavio@users.noreply.github.com>
 Andrea Dell'Orco <orco@paranoici.org>
@@ -22,9 +22,9 @@ Anna Doll <45283972+AnnaD15@users.noreply.github.com>
 Ariel Rokem <arokem@berkeley.edu>
 Ariel Rokem <arokem@berkeley.edu> <arokem@gmail.com>
 Arman Eshaghi <arman.eshaghi@gmail.com>
+Ashely Gillman <gillmanash@gmail.com> <ashley.gillman@csiro.au>
 Avneet Kaur <avneetkaur@bohr.neurobio.nru.dk>
 Avneet Kaur <avneetkaur@bohr.neurobio.nru.dk> <avneet14027@iiitd.ac.in>
-Ashely Gillman <gillmanash@gmail.com> <ashley.gillman@csiro.au>
 Basille Pinsard <basile.pinsard@umontreal.ca>
 Basille Pinsard <basile.pinsard@umontreal.ca> <bpinsard@imed.jussieu.fr>
 Ben Cipollini <bcipollini@classy.org> <bcipolli@ucsd.edu>
@@ -39,8 +39,8 @@ Blake Dewey <blake.dewey@jhu.edu> <deweybe@ndsl-nib-bdewey.ninds.nih.gov>
 Brendan Moloney <moloney.brendan@gmail.com>
 Caroline Froehlich <carol.frohlich@gmail.com>
 Christopher J. Markiewicz <effigies@gmail.com>
-Christopher J. Markiewicz <effigies@gmail.com> <markiewicz@stanford.edu>
 Christopher J. Markiewicz <effigies@gmail.com> <effigies@bu.edu>
+Christopher J. Markiewicz <effigies@gmail.com> <markiewicz@stanford.edu>
 Christopher John Steele <steelec@gmail.com>
 Cindee Madison <cindee@berkeley.edu>
 Colin Buchanan <colinrbuchanan@gmail.com>
@@ -49,8 +49,8 @@ Colin Buchanan <colinrbuchanan@gmail.com> <mankind@MacBook.local>
 Daniel Brenner <daniel.brenner@me.com>
 Daniel Clark <danieljclark87@gmail.com>
 Daniel Geisler <daniel.geisler@gmail.com>
-Daniel Geisler <daniel.geisler@gmail.com> <daniel.geisler@uniklinikum-dresden.de>
 Daniel Geisler <daniel.geisler@gmail.com> <3453485+daniel-ge@users.noreply.github.com>
+Daniel Geisler <daniel.geisler@gmail.com> <daniel.geisler@uniklinikum-dresden.de>
 Daniel Ginsburg <daniel.ginsburg@childrens.harvard.edu>
 Daniel McNamee <dmcx88@gmail.com>
 David Ellis <dgellis90@gmail.com> <david-ellis@uiowa.edu>
@@ -89,17 +89,17 @@ Hrvoje Stojic <hrvoje.stojic@protonmail.com>
 Isaac Schwabacher <ischwabacher@wisc.edu>
 Jakub Kaczmarzyk <jakubk@mit.edu>
 James Kent <james-kent@uiowa.edu>
-James Kent <james-kent@uiowa.edu> <mertzf@bargle.argle>
 James Kent <james-kent@uiowa.edu> <jamesdkent21@gmail.com>
+James Kent <james-kent@uiowa.edu> <mertzf@bargle.argle>
 Janosch Linkersdörfer <linkersdoerfer@gmail.com>
 Jason Wong <jf126dolphin@gmail.com>
 Jason Wong <jf126dolphin@gmail.com> <jasonwong73@ucla.edu>
 Jens Kleesiek <kleesiek@uni-heidelberg.de>
 Jessica Forbes <jessica-forbes@uiowa.edu>
 Jérémy Guillon <jeremy.guillon@inria.fr> <jeremy.guillon@etu.upmc.fr>
+Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
 Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <joerg.stadler@lin-magdeburg.de>
 Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <jstadler@ilin-magdeburg.de>
-Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
 John A. Lee <johnleenimh@gmail.com>
 John A. Lee <johnleenimh@gmail.com> <leej3@users.noreply.github.com>
 Joke Durnez <joke.durnez@gmail.com>
@@ -116,39 +116,37 @@ Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshijordan@iPhone-010060104098.ucsf.ed
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kjordan@codd.radiology.ucsf.edu>
 Kevin Sitek <ksitek@mit.edu>
 Kevin Sitek <ksitek@mit.edu> <sitek.kevin@gmail.com>
-Sin Kim <kimsin98@gmail.com>
-Sin Kim <kimsin98@gmail.com> <AKSoo@users.noreply.github.com>
 Koen Helwegen <kg.helwegen@gmail.com>
 Kornelius Podranski <kilo13@web.de>
 Kristofer Montazeri <kristofer.montazeri@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <chris.gorgolewski@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500.(none)>
-Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <krzysztof.gorgolewski+fake@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-dtc-laptop>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filolaptop>
+Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <krzysztof.gorgolewski+fake@gmail.com>
 Kshitij Chawla <kc.insight.pi@gmail.com>
 Leonie Lampe <leonie.lampe@gmail.com>
 Lukas Snoek <lukassnoek@gmail.com>
 Marcel Falkiewicz <mfalkiewicz@gmail.com> <m.falkiewicz@nencki.gov.pl>
 Maria de Fatima Dias <mfatimamachado13@gmail.com>
 Maria de Fatima Dias <mfatimamachado13@gmail.com> <fmachado@dei.uc.pt>
-Martin Perez-Guevara <mperezguevara@gmail.com>
 Martin Norgaard <martin.noergaard@nru.dk>
+Martin Perez-Guevara <mperezguevara@gmail.com>
 Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@mit.edu>
 Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@stanford.edu>
-Mathieu Dubois <mathieu.dubois@icm-institute.org> <mathieu.dubois@cea.fr>
 Mathieu Dubois <mathieu.dubois@icm-institute.org> <duboismathieu_gaas@yahoo.fr>
+Mathieu Dubois <mathieu.dubois@icm-institute.org> <mathieu.dubois@cea.fr>
 Matteo Mancini <ingmatteomancini@gmail.com>
 Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu>
 Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu> <mvdoc.gr@dartmouth.edu>
 Matthew Cieslak <mattcieslak@gmail.com>
 Michael Clark <michael.clark195@gmail.com> <clarkmg@nih.gov>
 Michael Dayan <mdayan.research@gmail.com>
 Michael Dayan <mdayan.research@gmail.com> <mdayan.comp@gmail.com>
-Michael Dayan <mdayan.research@gmail.com> mick-d <mid2021@CHUCK.(none)>
 Michael Dayan <mdayan.research@gmail.com> <michael@mail.example.com>
+Michael Dayan <mdayan.research@gmail.com> mick-d <mid2021@CHUCK.(none)>
 Michael Joseph <josephmje.22@gmail.com>
 Michael Joseph <josephmje.22@gmail.com> <mjoseph@scclogin02.camhres.ca>
 Michael Philipp Notter <michaelnotter@hotmail.com>
@@ -171,8 +169,8 @@ Paul Kuntke <paul@42degreesoffreedom.com> <paul@kuntke.de>
 Paul Sharp <psharp1289@gmail.com>
 Ranjit Khanuja <ranjit.jhu@gmail.com>
 Rastko Ćirić <rc042010@mymail.pomona.edu>
-Rastko Ćirić <rc042010@mymail.pomona.edu> <rciric@users.noreply.github.com>
 Rastko Ćirić <rc042010@mymail.pomona.edu> <rastko@stanford.edu>
+Rastko Ćirić <rc042010@mymail.pomona.edu> <rciric@users.noreply.github.com>
 Raunak Jalan <ronakjalan98@gmail.com>
 Raunak Jalan <ronakjalan98@gmail.com> <41023976+RaunakJalan@users.noreply.github.com>
 Ross Markello <rossmarkello@gmail.com> <rdm222@cornell.edu>
@@ -186,15 +184,17 @@ Serge Koudoro <skab12@gmail.com>
 Sharad Sikka <ssikka25@gmail.com>
 Shariq Iqbal <shariqiqbal2810@gmail.com>
 Shariq Iqbal <shariqiqbal2810@gmail.com> <shariqiqbal2810@users.noreply.github.com>
-Shoshana Berleant <berleant@stanford.edu> Shoshana Berleant <nope>
 Shoshana Berleant <berleant@stanford.edu> <shoshber@users.noreply.github.com>
+Shoshana Berleant <berleant@stanford.edu> Shoshana Berleant <nope>
 Shoshana Berleant <berleant@stanford.edu> Ubuntu <ubuntu@ip-172-31-43-202.us-west-2.compute.internal>
 Simon Rothmei <srothmei@mailbox.tu-berlin.de>
 Simon Rothmei <srothmei@mailbox.tu-berlin.de> <srothmei@users.noreply.github.com>
+Sin Kim <kimsin98@gmail.com>
+Sin Kim <kimsin98@gmail.com> <AKSoo@users.noreply.github.com>
 Siqi Liu <lsqshr@gmail.com>
 Steven Giavasis <sgiava77@gmail.com>
-Steven Giavasis <sgiava77@gmail.com> <steven.giavasis@cmi-rsch-li001.childmind.org>
 Steven Giavasis <sgiava77@gmail.com> <sgiavasis@ieee.org>
+Steven Giavasis <sgiava77@gmail.com> <steven.giavasis@cmi-rsch-li001.childmind.org>
 Steven Tilley <stilley@hollandbloorview.ca> <steve@steventilley.com>
 Sulantha Mathotaarachchi <sulantha.s@gmail.com>
 Sunjae Shim <85246533+sjshim@users.noreply.github.com>

.zenodo.json

@@ -318,6 +318,11 @@
       "name": "Bernardoni, Fabio",
       "orcid": "0000-0002-5112-405X"
     },
+    {
+      "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
+      "name": "Ben-Zvi, Gal",
+      "orcid": "0000-0002-5655-9423"
+    },
     {
       "affiliation": "State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands",
       "name": "Kong, Xiang-Zhen",
@@ -456,11 +461,6 @@
       "affiliation": "University of Iowa",
       "name": "Welch, David"
     },
-    {
-      "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
-      "name": "Ben-Zvi, Gal",
-      "orcid": "0000-0002-5655-9423"
-    },
     {
       "affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences",
       "name": "Contier, Oliver",
@@ -892,7 +892,11 @@
       "orcid": "0000-0002-5312-6729"
     }
   ],
-  "keywords": ["neuroimaging", "workflow", "pipeline"],
+  "keywords": [
+    "neuroimaging",
+    "workflow",
+    "pipeline"
+  ],
   "license": "Apache-2.0",
   "upload_type": "software"
 }

doc/changelog/1.X.X-changelog.rst

@@ -1,3 +1,14 @@
+1.8.4 (September 01, 2022)
+==========================
+
+Bug-fix release in the 1.8.x series.
+
+This release sets a maximum traits version to avoid new, breaking changes.
+
+  * MNT: Pin traits < 6.4 (https://github.com/nipy/nipype/pull/3501)
+  * ENH: Add inputs to mrtrix3.DWIPreprocInputSpec and remove mandatory annotation for pe_dir (https://github.com/nipy/nipype/pull/3470)
+
+
 1.8.3 (July 14, 2022)
 =====================
 

nipype/info.py

@@ -5,7 +5,7 @@
 
 # nipype version information
 # Remove .dev0 for release
-__version__ = "1.8.4.dev0"
+__version__ = "1.8.4"
 
 
 def get_nipype_gitversion():
@@ -171,6 +171,7 @@ def get_nipype_gitversion():
         "sphinxcontrib-apidoc",
     ],
     "duecredit": ["duecredit"],
+    "maint": ["GitPython", "fuzzywuzzy"],
     "nipy": ["nitime", "nilearn", "dipy", "nipy", "matplotlib"],
     "profiler": ["psutil>=5.0"],
     "pybids": ["pybids>=0.7.0"],

tools/update_changes.sh

@@ -25,7 +25,8 @@ echo $HEADER >> newchanges
 echo $( printf "%${#HEADER}s" | tr " " "=" ) >> newchanges
 echo >> newchanges
 
-if [[ "x$2" != "x" ]]; then
+MILESTONE=${2:-""}
+if [[ "x$MILESTONE" != "x" ]]; then
     echo "(\`Full changelog <https://github.com/nipy/nipype/milestone/$2?closed=1>\`__)" >> newchanges
     echo >> newchanges
 fi

tools/update_mailmap.sh

@@ -0,0 +1,22 @@
+#!/bin/bash
+
+# usage -> bash update_mailmap.sh <previous-release>
+# by default, will use the latest tag
+
+set -ux
+
+ROOT=$( git rev-parse --show-toplevel )
+MAILMAP=$ROOT/.mailmap
+
+LAST=$(git describe --tags `git rev-list --tags --max-count=1`)
+RELEASE=${1:-$LAST}
+
+IFS=$'\n'
+for NAME in $(git shortlog -nse $RELEASE.. | cut -f2-); do
+    echo $NAME
+done
+
+# sort and write
+sort $MAILMAP > .tmpmailmap
+cp .tmpmailmap $MAILMAP
+rm .tmpmailmap