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FIX: Purge deprecated exception content accesses #3272

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Nov 23, 2020
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4 changes: 2 additions & 2 deletions nipype/interfaces/base/tests/test_specs.py
Original file line number Diff line number Diff line change
Expand Up @@ -183,7 +183,7 @@ class DeprecationSpec3(nib.TraitedSpec):
except nib.TraitError:
not_raised = False
assert not_raised
assert len(w) == 1, "deprecated warning 1 %s" % [w1.message for w1 in w]
assert len(w) == 1, f"deprecated warning 1 {[str(w1) for w1 in w]}"

with warnings.catch_warnings(record=True) as w:
warnings.filterwarnings("always", "", UserWarning)
Expand All @@ -201,7 +201,7 @@ class DeprecationSpec3(nib.TraitedSpec):
assert not_raised
assert spec_instance.foo == Undefined
assert spec_instance.bar == 1
assert len(w) == 1, "deprecated warning 2 %s" % [w1.message for w1 in w]
assert len(w) == 1, f"deprecated warning 2 {[str(w1) for w1 in w]}"


def test_namesource(setup_file):
Expand Down
21 changes: 6 additions & 15 deletions nipype/interfaces/io.py
Original file line number Diff line number Diff line change
Expand Up @@ -1010,11 +1010,8 @@ def _list_outputs(self):
try:
filledtemplate = template % tuple(argtuple)
except TypeError as e:
raise TypeError(
e.message
+ ": Template %s failed to convert with args %s"
% (template, str(tuple(argtuple)))
)
raise TypeError(f"{e}: Template {template} failed to convert "
f"with args {tuple(argtuple)}")
outfiles = []
for fname in bkt_files:
if re.match(filledtemplate, fname):
Expand Down Expand Up @@ -1286,11 +1283,8 @@ def _list_outputs(self):
try:
filledtemplate = template % tuple(argtuple)
except TypeError as e:
raise TypeError(
e.message
+ ": Template %s failed to convert with args %s"
% (template, str(tuple(argtuple)))
)
raise TypeError(f"{e}: Template {template} failed to convert "
f"with args {tuple(argtuple)}")
outfiles = glob.glob(filledtemplate)
if len(outfiles) == 0:
msg = "Output key: %s Template: %s returned no files" % (
Expand Down Expand Up @@ -2664,11 +2658,8 @@ def _list_outputs(self):
try:
filledtemplate = template % tuple(argtuple)
except TypeError as e:
raise TypeError(
e.message
+ ": Template %s failed to convert with args %s"
% (template, str(tuple(argtuple)))
)
raise TypeError(f"{e}: Template {template} failed to convert "
f"with args {tuple(argtuple)}")

outputs[key].append(self._get_files_over_ssh(filledtemplate))

Expand Down
8 changes: 3 additions & 5 deletions nipype/utils/filemanip.py
Original file line number Diff line number Diff line change
Expand Up @@ -439,7 +439,7 @@ def copyfile(
fmlogger.debug("Copying File: %s->%s", newfile, originalfile)
shutil.copyfile(originalfile, newfile)
except shutil.Error as e:
fmlogger.warning(e.message)
fmlogger.warning(str(e))

# Associated files
if copy_related_files:
Expand Down Expand Up @@ -870,10 +870,8 @@ def get_dependencies(name, environ):
o, e = proc.communicate()
deps = o.rstrip()
except Exception as ex:
deps = '"%s" failed' % command
fmlogger.warning(
"Could not get dependencies of %s. Error:\n%s", name, ex.message
)
deps = f'{command!r} failed'
fmlogger.warning(f"Could not get dependencies of {name}s. Error:\n{ex}")
return deps


Expand Down
2 changes: 1 addition & 1 deletion nipype/utils/subprocess.py
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@ def _process(drain=0):
res = select.select(streams, [], [], timeout)
except select.error as e:
iflogger.info(e)
if e[0] == errno.EINTR:
if e.errno == errno.EINTR:
return
else:
raise
Expand Down