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FIX: Order of SPM.NewSegment channel_info boolean tuple is (Field, Corrected) #2817

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Merged
merged 1 commit into from
Dec 14, 2018
Merged

FIX: Order of SPM.NewSegment channel_info boolean tuple is (Field, Corrected) #2817

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8 changes: 4 additions & 4 deletions nipype/interfaces/spm/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1487,7 +1487,7 @@ class NewSegmentInputSpec(SPMCommandInputSpec):
desc="""A tuple with the following fields:
- bias reguralisation (0-10)
- FWHM of Gaussian smoothness of bias
- which maps to save (Corrected, Field) - a tuple of two boolean values""",
- which maps to save (Field, Corrected) - a tuple of two boolean values""",
field='channel')
tissues = traits.List(
traits.Tuple(
Expand Down Expand Up @@ -1681,11 +1681,11 @@ def _list_outputs(self):

if isdefined(self.inputs.channel_info):
if self.inputs.channel_info[2][0]:
outputs['bias_corrected_images'].append(
os.path.join(pth, "m%s.nii" % (base)))
if self.inputs.channel_info[2][1]:
outputs['bias_field_images'].append(
os.path.join(pth, "BiasField_%s.nii" % (base)))
if self.inputs.channel_info[2][1]:
outputs['bias_corrected_images'].append(
os.path.join(pth, "m%s.nii" % (base)))
return outputs


Expand Down