[FIX] Keep profile files with remove_unnecessary_outputs = true

[oesteban]

Close #2717

Summary

Fixes # .

List of changes proposed in this PR (pull-request)

Acknowledgment

• (Mandatory) I acknowledge that this contribution will be available under the Apache 2 license.

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Codecov Report

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@@            Coverage Diff            @@
##             master    #2718   +/-   ##
=========================================
  Coverage          ?   67.61%           
=========================================
  Files             ?      340           
  Lines             ?    43153           
  Branches          ?     5351           
=========================================
  Hits              ?    29179           
  Misses            ?    13272           
  Partials          ?      702

Flag	Coverage Δ
#smoketests	50.57% <ø> (?)
#unittests	65.08% <ø> (?)

Impacted Files	Coverage Δ
nipype/pipeline/engine/utils.py	82.64% <ø> (ø)

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