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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 59 27

Repositories

Showing 10 of 89 repositories
  • unifrac Public
    biocore/unifrac’s past year of commit activity
    Python 41 BSD-3-Clause 17 9 0 Updated Apr 18, 2025
  • improved-octo-waddle Public

    Balanced parentheses succinct data structure in Python

    biocore/improved-octo-waddle’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 7 17 1 Updated Apr 18, 2025
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    biocore/microsetta-private-api’s past year of commit activity
    Python 6 BSD-3-Clause 19 63 2 Updated Apr 17, 2025
  • metapool Public

    Jupyter notebooks to assist with sample processing

    biocore/metapool’s past year of commit activity
    Python 8 MIT 16 54 (2 issues need help) 0 Updated Apr 17, 2025
  • microsetta-admin Public
    biocore/microsetta-admin’s past year of commit activity
    Python 0 BSD-3-Clause 10 16 4 Updated Apr 16, 2025
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface’s past year of commit activity
    Jinja 1 BSD-3-Clause 17 44 4 Updated Apr 10, 2025
  • qurro Public

    Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

    biocore/qurro’s past year of commit activity
    JavaScript 33 BSD-3-Clause 10 124 (4 issues need help) 0 Updated Apr 4, 2025
  • unifrac-binaries Public
    biocore/unifrac-binaries’s past year of commit activity
    C++ 2 BSD-3-Clause 9 4 0 Updated Mar 28, 2025
  • micov Public

    Aggregate genome coverage

    biocore/micov’s past year of commit activity
    Python 4 5 8 0 Updated Mar 21, 2025
  • deblur Public

    Deblur is a greedy deconvolution algorithm based on known read error profiles.

    biocore/deblur’s past year of commit activity
    Python 94 BSD-3-Clause 40 14 12 Updated Mar 8, 2025
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