pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>pl.krzysg</groupId>
    <artifactId>JavaCppTemplate</artifactId>
    <version>1.0-SNAPSHOT</version>

    <properties>
        <maven.compiler.target>1.8</maven.compiler.target>
        <maven.compiler.source>1.8</maven.compiler.source>

        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        
	<javacpp.parser.skip>false</javacpp.parser.skip>     <!-- To skip header file parsing phase: -Djavacpp.parser.skip=true  -->

        <javacpp.version>1.4.1</javacpp.version>
    </properties>

    <dependencies>
        <dependency>
            <groupId>org.bytedeco</groupId>
            <artifactId>javacpp</artifactId>
            <version>${javacpp.version}</version>
        </dependency>
    </dependencies>

    <build>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.codehaus.mojo</groupId>
                    <artifactId>exec-maven-plugin</artifactId>
                    <version>1.4.0</version>
                    <configuration>
                        <mainClass>pl.krzysg.MainApp</mainClass>
                    </configuration>
                </plugin>

                <plugin>
                    <artifactId>maven-resources-plugin</artifactId>
                    <version>3.1.0</version>
                    <executions>
                        <execution>
                            <id>javacpp.parser.resources</id>
                            <phase>generate-sources</phase>
                            <goals>
                                <goal>resources</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.7.0</version>
                    <executions>
                        <execution>
                            <id>javacpp.parser.presets</id>
                            <phase>generate-sources</phase>
                            <goals>
                                <goal>compile</goal>
                            </goals>
                            <configuration>
                                <includes>
                                    <include>pl/krzysg/cppLib/presets/*.java</include>
                                </includes>
                            </configuration>
                        </execution>
                    </executions>
                </plugin>
            </plugins>
        </pluginManagement>

        <plugins>
            <plugin>
                <groupId>org.bytedeco</groupId>
                <artifactId>javacpp</artifactId>
                <version>${javacpp.version}</version>
                <configuration>
                    <classPath>${project.build.outputDirectory}</classPath>
                    <includePaths>
                        <includePath>${basedir}/src/main/cpp/pl/krzysg/</includePath>
                    </includePaths>
                    <linkPaths>
                        <!-- <linkPath>/usr/local/Cellar/hdf5/1.10.2_1/lib/</linkPath> -->
                    </linkPaths>
                    <copyLibs>true</copyLibs>
                    <compilerOptions>
                        <compilerOption>-std=c++14</compilerOption>
                    </compilerOptions>
                </configuration>
		<executions>
		    <execution>
                        <id>javacpp.parser</id>
                        <phase>process-sources</phase>
                        <goals>
                            <goal>build</goal>
                        </goals>
                        <configuration>
                            <skip>${javacpp.parser.skip}</skip>
			    <outputDirectory>${project.build.sourceDirectory}</outputDirectory>
			    <classOrPackageName>pl.krzysg.cppLib.presets.MyCppLibConfig</classOrPackageName>
                        </configuration>
                    </execution>
                    <execution>
                        <id>process-classes</id>
                        <phase>compile</phase>
                        <goals>
                            <goal>build</goal>
                        </goals>
                        <configuration>
                            <classOrPackageNames>
                                <classOrPackageName>pl.krzysg.cppLib.target.*</classOrPackageName>
                                <classOrPackageName>pl.krzysg.cppLib.*</classOrPackageName>
                            </classOrPackageNames>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

        </plugins>
    </build>

</project>