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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(filter_data,Seurat)
S3method(filter_data,default)
S3method(merge_metadata,Seurat)
S3method(merge_metadata,default)
S3method(normalize_data,Seurat)
S3method(normalize_data,default)
S3method(plot_distribution,Seurat)
S3method(plot_distribution,default)
S3method(run_dr,Seurat)
S3method(run_dr,default)
export("%>%")
export(.data)
export(add_seurat_assay)
export(as_data_frame_seurat)
export(calc_clust_averages)
export(calculate_clusters)
export(calculate_mito_pct)
export(calculate_variance)
export(check_identity_column)
export(create_color_vect)
export(create_seurat_obj)
export(differential_expression_per_cluster)
export(enexpr)
export(enexprs)
export(enquo)
export(enquos)
export(ensym)
export(ensyms)
export(expr)
export(filter_data)
export(geneset_score)
export(get_color_scheme)
export(get_dr_point_size)
export(get_test_counts_matrix)
export(import_mtx)
export(load_sample_counts_matrix)
export(log_normalize_data)
export(merge_metadata)
export(normalize_data)
export(plot_distribution)
export(quo)
export(quo_name)
export(quos)
export(run_dr)
export(run_pca)
export(run_tsne)
export(run_umap)
export(save_seurat_counts_matrix)
export(sctransform_data)
export(set_identity)
export(sym)
export(syms)
export(write_message)
import(Rtsne)
import(Seurat)
import(dplyr)
import(ggplot2)
import(readr)
import(tibble)
import(tidyr)
import(utils)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(RColorBrewer,brewer.pal)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,ScaleData)
importFrom(Seurat,VariableFeatures)
importFrom(SeuratObject,Idents)
importFrom(data.table,":=")
importFrom(data.table,.SD)
importFrom(data.table,fread)
importFrom(data.table,setDT)
importFrom(ggsci,pal_d3)
importFrom(ggsci,pal_igv)
importFrom(glue,glue)
importFrom(irlba,prcomp_irlba)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(purrr,reduce)
importFrom(rlang,.data)
importFrom(rlang,enexpr)
importFrom(rlang,enexprs)
importFrom(rlang,enquo)
importFrom(rlang,enquos)
importFrom(rlang,ensym)
importFrom(rlang,ensyms)
importFrom(rlang,expr)
importFrom(rlang,exprs)
importFrom(rlang,quo)
importFrom(rlang,quo_name)
importFrom(rlang,quos)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(sctransform,vst)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_sub)
importFrom(stringr,str_subset)
importFrom(utils,read.table)
importFrom(uwot,umap)